PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017830
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 228aa    MW: 24727.9 Da    PI: 4.7308
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017830genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.92.1e-123987255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+G+r++   g+Wv+eIr+p++   + r++lg+f  ae Aa+ ++aa++ l+g
  Lus10017830 39 NYRGIRYRG--GKWVSEIREPRK---TNRIWLGTFPAAEIAAAGYDAAALGLKG 87
                 69****975..*********854...49*********************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-1338103No hitNo description
PfamPF008474.1E-63886IPR001471AP2/ERF domain
SMARTSM003802.0E-1839107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-2139102IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-123991IPR016177DNA-binding domain
PROSITE profilePS5103218.30739101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MADPYNNYYN YSYPAPHPNN NNAPTNSTSP PSSSSKHPNY RGIRYRGGKW VSEIREPRKT  60
NRIWLGTFPA AEIAAAGYDA AALGLKGANA LKGDEAVLNF PEAAGSYPIP ASSSAADIRN  120
AAAAAAAIKK DEIMRATWSS TSINDHNHEQ GLTSNFNEFG SGATANYSGD DQFVDEEALF  180
DMPNLLVNMA QGMMVSPPRF PTYDDGCYYS QEDDHTRNGD SLWSGYY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017830
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100178301e-167(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.17e-25ERF family protein