PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018020
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 280aa    MW: 31153.5 Da    PI: 7.3751
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018020genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-13107153354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+E+rRR+riNs +++Lr llP +      K +Ka+ L k+ve +k+L
  Lus10018020 107 QNHKEAEKRRRERINSHLDKLRALLPCN-----SKTDKASLLAKVVERVKEL 153
                  68*************************8.....7*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-14100160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.656104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-13107156No hitNo description
PfamPF000103.0E-11107153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-14108162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-12110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MQHPAAGENY WVNDSHSYLF RLLAGENGSA FQQQQQQNGF VHQNGLICSG NNNSYNDNQA  60
DSSSCDYSND QYYHHRHHQL SGSGSAITAG ENSRTTTPQD RAYAALQNHK EAEKRRRERI  120
NSHLDKLRAL LPCNSKTDKA SLLAKVVERV KELKQQTTEI QGLDTFPSEV DEITVAEEYG  180
GGGRNNNMVY RASVCCEDRS ELLPELIEIF KSLHLKTVRA EMVTLAGRTR SVLMVAPAED  240
HAGVESIHFL QAALKSLLER GNNSGGTNEP SKRRRLLKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271275KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307967.21e-86transcription factor bHLH106
RefseqXP_011040758.11e-86PREDICTED: transcription factor bHLH106-like
SwissprotO806741e-64BH106_ARATH; Transcription factor bHLH106
TrEMBLB9H8T83e-85B9H8T8_POPTR; BHLH family protein
STRINGLus100180200.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.18e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]