PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10018275

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 175aa MW: 18666.2 Da PI: 8.6168

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10018275	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.1	2e-45	16	115	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca+dCv++pyfpa+qp+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal++ Lus10018275 16 PCAACKLLRRRCAQDCVFSPYFPADQPHKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQ 113 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Lus10018275 114 AE 115 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.266	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-45	16	113	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MKENNGRKQG GAAASPCAAC KLLRRRCAQD CVFSPYFPAD QPHKFANVHK VFGASNVNKM 60 LQELPVHQRG DAVSSMVYEA NARVRDPVYG CVGAISSLQQ QIDVLQTQLA LAQAEVVHLR 120 VRQTAGLSGH GLSSGSPSHS GSPSSRLMGI SQGKPIFDMD MVDHASLGES MWSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-49	13	127	8	122	LOB family transfactor Ramosa2.1
5ly0_B	6e-49	13	127	8	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10018275

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009353911.1	1e-102	PREDICTED: LOB domain-containing protein 4
Swissprot	Q9SHE9	2e-82	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A314YWZ3	1e-103	A0A314YWZ3_PRUYE; LOB domain-containing protein 4
STRING	Lus10018275	1e-127	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	4e-79	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	Lus10018275