PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018328
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 180aa    MW: 19789.3 Da    PI: 10.0616
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018328genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-053658123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C++ F ++  L  H++ H
  Lus10018328 36 FSCNYCNREFYSSQALGGHQNAH 58
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.89E-63363No hitNo description
PROSITE profilePS5015711.1573663IPR007087Zinc finger, C2H2
PfamPF139121.8E-53660IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MESVNDHQPT NKKRKEELNL IDCLDAGTSS QEKAKFSCNY CNREFYSSQA LGGHQNAHKR  60
ERCLAKRGLM MITRRVNTTA AASYYHPSTF HNSWHRYGTS PFAVQPHSLH HNGPPPISSS  120
SRLPAAAASH QGPLQPRGFG MLTNSIMPLQ PPPPPPSPPL STTTSSQYSS QKLDLALRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018328
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493763.11e-23PREDICTED: zinc finger protein 3-like
STRINGLus100183281e-131(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1704455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.12e-24zinc finger protein 3