PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10018360

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

HB-other

Protein Properties

Length: 246aa MW: 28307.7 Da PI: 9.1519

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10018360	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.4	3.4e-20	62	117	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+ q+k+WFqN+R+++k Lus10018360 62 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRELGLEPLQIKFWFQNKRTQMK 117 688999***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.85E-20	43	119	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.2E-23	46	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.552	59	119	IPR001356	Homeobox domain
SMART	SM00389	2.9E-18	60	123	IPR001356	Homeobox domain
Pfam	PF00046	7.0E-18	62	117	IPR001356	Homeobox domain
CDD	cd00086	2.55E-17	62	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MFQPNMFDNP HIFKMDEMGK PSRDFFDDYD TKSGTETIGT GGAPSGEDDP DGSPSQQPPN 60 KKKRYHRHTQ HQIQEMESFF KECPHPDDKQ RKELGRELGL EPLQIKFWFQ NKRTQMKAQH 120 ERHENSILKA ENDKLRLENN RYKEALSNAS CPNCGGPAAL GEMSFDEQQL RIENARLRDE 180 IDRISAIAAK YVGKPITSFS HQSSLELGTA TFGGPQSPPP RPRPRHFRRV TFFFWGNVRT 240 RHRLP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10018360

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015884145.1	1e-103	homeobox-leucine zipper protein MERISTEM L1
Refseq	XP_015884152.1	1e-103	homeobox-leucine zipper protein MERISTEM L1
Refseq	XP_021887377.1	1e-103	homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
Swissprot	Q93V99	1e-95	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A061GGE7	1e-101	A0A061GGE7_THECC; Protodermal factor 2 isoform 1
TrEMBL	A0A2H5N1P0	1e-102	A0A2H5N1P0_CITUN; Uncharacterized protein
STRING	Lus10018360	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21159	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	4e-96	protodermal factor 2

Link Out ? help Back to Top
Phytozome	Lus10018360

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]