PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018488
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 201aa    MW: 23191.3 Da    PI: 9.7522
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018488genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.91.8e-34341252102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+ le++  +++isw+e+g+ fvv+ + ef++ +Lp+yFkh+nf+SF+RQLn+YgFkkv++++         weFkh +F++g++++l +i 
   Lus10018488  34 FLSKTYDFLEERPEERIISWNEDGTGFVVWSPAEFSELMLPRYFKHNNFSSFIRQLNTYGFKKVSSKR---------WEFKHGKFRRGNRDMLVEIT 121
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   rk+ 
   Lus10018488 122 RKRC 125
                   *975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-3629118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.0E-4630123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.89E-3031123IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-173457IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.0E-3134123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-177284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-178597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MNTVSGYPAA MDVNQAAAAT ATTGRGSVRA PAPFLSKTYD FLEERPEERI ISWNEDGTGF  60
VVWSPAEFSE LMLPRYFKHN NFSSFIRQLN TYGFKKVSSK RWEFKHGKFR RGNRDMLVEI  120
TRKRCEASSF PAYLKAANSN DETSDNDHHK RNIRLMMMEE NSNLRKEKLE LQTQIAEFRD  180
LKLKLLDFVG FVGQYVQKDL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B3e-19311233105Heat shock factor protein 2
5d8l_B3e-19311233105Heat shock factor protein 2
5d8l_D3e-19311233105Heat shock factor protein 2
5d8l_F3e-19311233105Heat shock factor protein 2
5d8l_H3e-19311233105Heat shock factor protein 2
5hdk_A3e-19301237110Heat shock factor protein 2
5hdk_B3e-19301237110Heat shock factor protein 2
5hdk_C3e-19301237110Heat shock factor protein 2
5hdk_D3e-19301237110Heat shock factor protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018488
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023877712.11e-75heat stress transcription factor B-2a-like
TrEMBLA0A2C9U4X01e-73A0A2C9U4X0_MANES; Uncharacterized protein
STRINGLus100184881e-149(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-40heat shock factor 4