PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018525
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 241aa    MW: 26172.4 Da    PI: 9.1436
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018525genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-161457144
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     +g+WTteEd++l   ++++G+g+W+t ++  g+ R++k+c++rw
      Lus10018525 14 KGPWTTEEDQKLTSFIQLHGPGNWRTLPKNAGLQRCGKSCRLRW 57
                     79****************************************** PP
2Myb_DNA-binding285e-0956792347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W++Ia++++ gRt++++k++w+++
      Lus10018525 56 RWSAIAARLP-GRTDNEIKNYWNTH 79
                     4*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-19557IPR009057Homeodomain-like
PROSITE profilePS5129418.687965IPR017930Myb domain
SMARTSM007172.8E-151382IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-181481IPR009057Homeodomain-like
PfamPF002491.0E-131457IPR001005SANT/Myb domain
CDDcd001674.26E-131680No hitNo description
Gene3DG3DSA:1.10.10.608.2E-135881IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRTPCCDKN GLKKGPWTTE EDQKLTSFIQ LHGPGNWRTL PKNAGLQRCG KSCRLRWSAI  60
AARLPGRTDN EIKNYWNTHI RKRLLRNGID PVTHAPRLDV LDLSAILGSA LCNVTPAASL  120
LSLLAGAGQA QQQQLFNPEL LRLAAALGSL NQQFPMNHQN AQTAPSQQIQ QQQQADMAGL  180
QEFGNNNNSG GSQQKSLVSV PEDFGFWNTI PELTDNCQTN FQSNNGGGGG FKFFGSEGKS  240
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018525
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447404.13e-76transcription factor MYB102
RefseqXP_024950462.13e-76transcription factor MYB102
SwissprotQ9LDR87e-69MY102_ARATH; Transcription factor MYB102
TrEMBLA0A2H5Q7U21e-74A0A2H5Q7U2_CITUN; Uncharacterized protein
TrEMBLV4W3V48e-75V4W3V4_9ROSI; Uncharacterized protein
STRINGLus100185251e-176(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-65MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]