PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10018546

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

MYB

Protein Properties

Length: 226aa MW: 25600.7 Da PI: 6.2459

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10018546	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ ++ ++G ++W++ ++ g++R++k+c++rw++yl Lus10018546 14 KGTWTPEEDMRLAAYISRYGCRNWRRLPEDAGLKRCGKSCRLRWLNYL 61 799*******************************************97 PP
2	Myb_DNA-binding	45.8	1.5e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T++E+ ++ ++++lG++ W+ Ia +m gRt++++k+ w+++l Lus10018546 67 RGGFTKDEEATILALHEKLGNK-WSIIATHMS-GRTDNEIKNLWNTHL 112 788*****************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.775	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	7.86E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-16	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	8.77E-10	16	61	No hit	No description
PROSITE profile	PS51294	23.845	62	116	IPR017930	Myb domain
SMART	SM00717	2.4E-12	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-13	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-24	69	114	IPR009057	Homeodomain-like
CDD	cd00167	1.59E-9	70	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MARTPYVDRN GLKKGTWTPE EDMRLAAYIS RYGCRNWRRL PEDAGLKRCG KSCRLRWLNY 60 LRPDIKRGGF TKDEEATILA LHEKLGNKWS IIATHMSGRT DNEIKNLWNT HLRKLQPPVE 120 LQKEATCSNI DAVDDHHSPQ QISAGSNASS GTSCVAADQA MSISRSVAPT GNDEVLISDD 180 FWSQPFLPYG EDIDQGTEAY GTSGDEFQME REMLWFYHAL MNYSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-24	12	114	25	126	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10018546

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023889531.1	2e-60	transcription factor MYB14-like
Swissprot	Q9S9Z2	2e-52	MYB93_ARATH; Transcription factor MYB93
TrEMBL	B9INU3	4e-58	B9INU3_POPTR; Uncharacterized protein
STRING	Lus10018546	1e-170	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF356	33	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	6e-55	myb domain protein 93

Link Out ? help Back to Top
Phytozome	Lus10018546

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]