PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10018610

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

SBP

Protein Properties

Length: 209aa MW: 23721.5 Da PI: 8.7981

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10018610	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.2	7.3e-41	85	161	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+e+C++dls ak yhrrh+vCe hska+vvlvsgl+qrfCqqCsrfhel efD+ krsCrrrLa+hnerrrk++ Lus10018610 85 CCQAEKCTNDLSVAKAYHRRHRVCEYHSKAQVVLVSGLRQRFCQQCSRFHELPEFDDMKRSCRRRLAGHNERRRKNA 161 6**************************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.8E-31	82	147	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.376	83	160	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.53E-36	85	161	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.8E-31	86	159	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MEEGGKGKQK RTMVVKKEFD DDPADSSSDE YGSDQYLHQQ QGMGYFFDDD DSSESCKKKK 60 LVIGTGTTAT ASFAGGERRV AGGRCCQAEK CTNDLSVAKA YHRRHRVCEY HSKAQVVLVS 120 GLRQRFCQQC SRFHELPEFD DMKRSCRRRL AGHNERRRKN AAAESHPHHP PPHEGSSARK 180 EDTIMCDPRE RIKIVTAENP SYKHFQIR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-34	81	159	6	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10018610

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021681200.1	7e-58	squamosa promoter-binding protein 1-like isoform X1
Swissprot	Q38741	1e-37	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	B9RVW3	5e-53	B9RVW3_RICCO; Squamosa promoter-binding protein, putative
STRING	Lus10018610	1e-154	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	3e-38	squamosa promoter binding protein-like 5

Link Out ? help Back to Top
Phytozome	Lus10018610

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]