PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018623
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 155aa    MW: 16956.4 Da    PI: 9.5396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018623genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.7e-21251255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a+++a++ ++g
  Lus10018623  2 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDNAARDYRG 51
                 69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-28253IPR001471AP2/ERF domain
PfamPF008471.1E-14251IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-20253IPR016177DNA-binding domain
CDDcd000182.42E-26252No hitNo description
PROSITE profilePS5103221.654268IPR001471AP2/ERF domain
SMARTSM003801.1E-26261IPR001471AP2/ERF domain
PRINTSPR003676.0E-12314IPR001471AP2/ERF domain
PRINTSPR003676.0E-122541IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MHYRGVRKRP WGRYAAEIRD PGKKTRVWLG TFDTAEEAAR AYDNAARDYR GPQVPXXXXX  60
XXXXXXFLFV KQRENGGAVW LFDGILRPDL AAAAAVVARQ QFSLQLGGTF GLGTGSQSSE  120
SDSSSVVDCK QLPPPAAKSM ELNLDLNLAP PMSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-18253254ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-18253557ATERF1
3gcc_A4e-18253557ATERF1
5wx9_A5e-183511564Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018623
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894358.16e-32ethylene-responsive transcription factor 4
TrEMBLA0A1S3C1T31e-27A0A1S3C1T3_CUCME; LOW QUALITY PROTEIN: ethylene-responsive transcription factor 4
STRINGLus100186231e-100(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-18erf domain protein 9