PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10018714

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

M-type_MADS

Protein Properties

Length: 252aa MW: 28617.2 Da PI: 6.9571

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10018714	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89	2.4e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l +s Lus10018714 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSFFS 58 79********************************************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.1E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.815	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.65E-35	2	58	No hit	No description
SuperFamily	SSF55455	3.92E-27	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.1E-26	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MGRVKLQMKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSFFSAR 60 DQSSGGFPNS PECQFQEFEQ GMRRLRTQME TAHKQLRILE GNVSHITTLY EAEYQEQILQ 120 DALKRLLIRK QSLEQKLVSP DADSLMIRQQ APSSIVMDWI PSPQLQVVMS PPLCVEHQNN 180 NGGNPHHDHH HWPHFDDSLV LSNHNNHNSG GLSSATDEMP RHDSCTSWEE LLLNNNMDNL 240 GFTRTNSPPS S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-17	1	61	1	61	MEF2 CHIMERA
6byy_B	2e-17	1	61	1	61	MEF2 CHIMERA
6byy_C	2e-17	1	61	1	61	MEF2 CHIMERA
6byy_D	2e-17	1	61	1	61	MEF2 CHIMERA
6bz1_A	2e-17	1	61	1	61	MEF2 CHIMERA
6bz1_B	2e-17	1	61	1	61	MEF2 CHIMERA
6bz1_C	2e-17	1	61	1	61	MEF2 CHIMERA
6bz1_D	2e-17	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10018714

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021601760.1	1e-54	agamous-like MADS-box protein AGL66
Swissprot	Q9LM46	8e-32	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A2C9U0P6	3e-53	A0A2C9U0P6_MANES; Uncharacterized protein
STRING	Lus10018714	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13665	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	2e-34	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	Lus10018714

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]