PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10018723

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 125aa MW: 13775.5 Da PI: 8.7804

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10018723	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22	3e-07	63	90	5	31
HHHHHHHHHHHHHHHHHHHHCTSCC.C. CS HLH 5 hnerErrRRdriNsafeeLrellPk.as 31 h Er RR+r+++ f +L+ llP+ +s Lus10018723 63 HIWTERERRKRMRTMFTNLQALLPQlPS 90 6668*********************443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.91E-7	57	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.13E-5	58	91	No hit	No description
PROSITE profile	PS50888	8.632	58	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-5	62	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.8E-5	63	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MEVMIKSRNS SSNSLVGSME PTPATTEEAK VGKKRSSKAA SSSKKNHDDI GGDDDNQSEQ 60 QVHIWTERER RKRMRTMFTN LQALLPQLPS KAGARCSSQF PESLSVEDTF KLAAGEMNLW 120 LLSC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10018723

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A061FIU3	2e-15	A0A061FIU3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	Lus10018723	2e-87	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4773	33	58

Link Out ? help Back to Top
Phytozome	Lus10018723