PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018857
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 214aa    MW: 23084.6 Da    PI: 6.6953
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018857genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.91.8e-07189211325
                  XXCHHHCHHHHHHHHHHHHHHHH CS
       bZIP_1   3 elkrerrkqkNReAArrsRqRKk 25 
                  + +r++r++kNRe+A rsR+RK+
  Lus10018857 189 AQQRQKRMIKNRESAARSRERKQ 211
                  679*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.9E-5192211No hitNo description
PROSITE patternPS000360194209IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MATSKVISSS KAMSSSSKPK DSDPSASFSS QAARSHRFSS SDHHRTTTAM TVDGVLRSVY  60
SAPPHPSLES ALPTNHLALI NSNENGFAPS KTADDIWRDI VPTGRKELKE EEPDEMMTLE  120
DFLAKAGAGE GEDGEDDEVK MTPMLSFDSA NAIQMLDKVE GSIVGFGNGG GRGKRGRAAA  180
MEQQLDKAAQ QRQKRMIKNR ESAARSRERK QVD*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018857
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8309591e-123EU830959.1 Linum usitatissimum clone LU0019G07 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080743.11e-51G-box-binding factor 4 isoform X1
RefseqXP_012080744.11e-51ABSCISIC ACID-INSENSITIVE 5-like protein 3 isoform X2
SwissprotP427771e-26GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A067KEV03e-50A0A067KEV0_JATCU; Uncharacterized protein
STRINGLus100188571e-155(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.11e-24bZIP family protein