PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019085
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 381aa    MW: 42052.8 Da    PI: 5.1436
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019085genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed++lv +++++G g W+t + + g+ R++k+c++rw +yl
      Lus10019085 14 KGAWTSDEDQKLVSYIQEHGEGGWRTLPLKAGLQRCGKSCRLRWANYL 61
                     79********************************************97 PP
2Myb_DNA-binding60.43.9e-1967112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE+++++d+++ lG++ W++Iar+++ +Rt++++k++w+++l
      Lus10019085  67 RGEFSPEEEQRIIDLHASLGNR-WSAIARHLP-KRTDNEIKNYWNTHL 112
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-22564IPR009057Homeodomain-like
PROSITE profilePS5129413.757961IPR017930Myb domain
SuperFamilySSF466891.01E-2811108IPR009057Homeodomain-like
SMARTSM007173.9E-101363IPR001005SANT/Myb domain
PfamPF002499.5E-141461IPR001005SANT/Myb domain
PROSITE profilePS5129427.39662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2765116IPR009057Homeodomain-like
SMARTSM007173.3E-1866114IPR001005SANT/Myb domain
PfamPF002493.8E-1767112IPR001005SANT/Myb domain
CDDcd001675.61E-1469112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009625Biological Processresponse to insect
GO:0009733Biological Processresponse to auxin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGRTPCCNVD GLKKGAWTSD EDQKLVSYIQ EHGEGGWRTL PLKAGLQRCG KSCRLRWANY  60
LRPDIKRGEF SPEEEQRIID LHASLGNRWS AIARHLPKRT DNEIKNYWNT HLKKRLCDNI  120
DPTSHNNNKT LGPATSTTSA DVDQPSHIHV STSSSSAQLL NKLAAKLAQE EEEGRENDVV  180
PRPIRRVGSS SSSARLLNKM ASRLAQPMHC LNTLKSILSS AAAESDGGDY GNNMQRCAST  240
SSLQSESTAA TSSNVSRSND FNTADYNDEN MAFLDTLDLD SVLNDDEWPR QQQQQYGSSS  300
TLLFGGSQYS LDYDYGYGSM DLEQPSTTSS ASKSTSNDHV DDSCYDYGYG GEQIGADDYN  360
HRLGGLLDGD DEHGRTLWNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in determining the spatial distribution of aliphatic glucosinolates (AGLSs) within the leaf, mostly short chained. Together with MYB28/HAG1 and MYB29/HAG3, promotes aliphatic glucosinolate biosynthesis and represses indolic glucosinolate biosynthesis, but could not activate AGSL biosynthesis on its own. {ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:20348214, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:23943862}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019085
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by auxin (IAA) and jasmonic acid (JA). Accumulates upon mechanical stimuli (e.g. wounding) in inflorescence. Down-regulated by sulfur-deficient stress. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:23792303}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617198.11e-104transcription factor MYB28-like
SwissprotQ9SPG56e-75MYB76_ARATH; Transcription factor MYB76
TrEMBLA0A2C9VQR31e-102A0A2C9VQR3_MANES; Uncharacterized protein
STRINGLus100190850.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07700.16e-71myb domain protein 76
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  3. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]