PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10019093

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Dof

Protein Properties

Length: 472aa MW: 51070.8 Da PI: 6.8676

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10019093	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	124	184	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss Lus10019093 124 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSS 184 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	121	181	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	126	182	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	128	182	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	130	166	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MQEIHLQTPT KDPAIKLFGK NLPFHSDPAA DPLAISAGDP SSSDGNRGED DKKTNKDCVP 60 DGEDTADQGD GAMDDVEASA ATDNTKTTSV SEEDSSKSKS SKAGDKEQGD AAYTSGEKPV 120 LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKACQR YWTAGGTMRN VPVGAGRRKN 180 KNSSTHYRHI TISEALEAAR LEAPNDSTNH LQTTNGRVLS FGVDTTPVCD SMASLLNLAD 240 PKKVLNRFPS SADKPKVGDQ NGDACSNASM EEGGKPCTQE QPFVQNNING FSPHPIPCLP 300 GIPWHYPWNP MMPQLAFCPP GFAMSFYPPP PHHPHAAYWN NIPVQSPQYS SSSSNDKATY 360 SSGPISPTLG KHSREAEAVK PEDLEKEELS RHKNGSSVLV PKILRIDDPT EAAKSSIWAT 420 LGIKNESLGS GGLFKGFQRK GDEKNHVAET SPVLVANPAA LSRSMKFRES S*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MQEIHLQTPT KDPAIKLFGK NLPFHSDPAA DPLAISAGDP SSSDGNRGED DKKTNKDCVP  60
DGEDTADQGD GAMDDVEASA ATDNTKTTSV SEEDSSKSKS SKAGDKEQGD AAYTSGEKPV  120
LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKACQR YWTAGGTMRN VPVGAGRRKN  180
KNSSTHYRHI TISEALEAAR LEAPNDSTNH LQTTNGRVLS FGVDTTPVCD SMASLLNLAD  240
PKKVLNRFPS SADKPKVGDQ NGDACSNASM EEGGKPCTQE QPFVQNNING FSPHPIPCLP  300
GIPWHYPWNP MMPQLAFCPP GFAMSFYPPP PHHPHAAYWN NIPVQSPQYS SSSSNDKATY  360
SSGPISPTLG KHSREAEAVK PEDLEKEELS RHKNGSSVLV PKILRIDDPT EAAKSSIWAT  420
LGIKNESLGS GGLFKGFQRK GDEKNHVAET SPVLVANPAA LSRSMKFRES S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10019093

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352939	6e-33	AK352939.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-18-K13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021682247.1	1e-175	cyclic dof factor 3
TrEMBL	A0A067K585	1e-173	A0A067K585_JATCU; Uncharacterized protein
STRING	Lus10019093	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-104	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Lus10019093