PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019256
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 218aa    MW: 23958.7 Da    PI: 7.8579
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019256genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-1891145256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++t++q   Lee F+ ++++s +++++LA++l+L  rqV vWFqNrRa+ k
  Lus10019256  91 RKKLRLTRDQSALLEENFKHHSTLSPKQKQDLARQLKLRRRQVEVWFQNRRARSK 145
                  78889************************************************98 PP
2HD-ZIP_I/II114.46.8e-3791180190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+++q++lLEe+F+++++L+p++K++lar+L+l+ rqv+vWFqnrRAR k+kq+E+d++ Lk++y++l++en++L+kev++L+++
  Lus10019256  91 RKKLRLTRDQSALLEENFKHHSTLSPKQKQDLARQLKLRRRQVEVWFQNRRARSKLKQTEVDCQLLKKCYQSLTDENSKLKKEVHQLKAA 180
                  69*************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-1873145IPR009057Homeodomain-like
SuperFamilySSF466899.41E-1880148IPR009057Homeodomain-like
PROSITE profilePS5007117.02287147IPR001356Homeobox domain
SMARTSM003893.6E-1589151IPR001356Homeobox domain
PfamPF000468.4E-1691145IPR001356Homeobox domain
CDDcd000861.48E-1691148No hitNo description
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
SMARTSM003408.3E-15147191IPR003106Leucine zipper, homeobox-associated
PfamPF021833.4E-9147179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEDTNLLLNL TLSNHHHFPA AGEPSDNSVD VGASLTLSLL SNHRQQSPES AKREREIVVS  60
STDDDEEAET TTRVSSGKVS DEDDGGCGGN RKKLRLTRDQ SALLEENFKH HSTLSPKQKQ  120
DLARQLKLRR RQVEVWFQNR RARSKLKQTE VDCQLLKKCY QSLTDENSKL KKEVHQLKAA  180
AAVETAPFYS MTVTLCPSCG TKGSGGGFTD PSSSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019256
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237931.17e-57PREDICTED: homeobox-leucine zipper protein HAT22-like isoform X2
SwissprotP466043e-48HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2R6PA671e-54A0A2R6PA67_ACTCH; Homeobox-leucine zipper protein
STRINGLus100192561e-160(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-50HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]