PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019292
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 269aa    MW: 28805.8 Da    PI: 8.7261
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019292genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601002.3e-312103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C++ C+l+p++     p++q +++ +v+k+FG++ ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e
  Lus10019292   2 SCNGCRVLRKGCSETCILRPCLqwidsPESQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQTAVE 99 
                  6***********************************************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  Lus10019292 100 TVLR 103
                  9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.5231107IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIDSPE SQGHATVFVA KFFGRAGLMS FISAVPDSQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQTAVET VLRGGSLRAM PELLVAGSGS  120
ADQASDETSE VGVGCSDMWK LGGGGGGDNK DLISLSSNNH CRFSSSRSKV SPKRKRAEQP  180
PMMMKLMTRT SDLDLRLTPS ISPKAVPLYK PEIRRHGSPS MNSEESGTTT CLDSSAAPRV  240
WRNGNRDHQY GGLVGGGGEE KKLLNLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019292
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8295051e-116EU829505.1 Linum usitatissimum clone LU0011G12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525255.11e-116LOB domain-containing protein 37
SwissprotQ9SN236e-86LBD38_ARATH; LOB domain-containing protein 38
TrEMBLB9SGY61e-115B9SGY6_RICCO; LOB domain-containing protein, putative
STRINGLus100192920.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-85LOB domain-containing protein 38