PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019348
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 274aa    MW: 30151.7 Da    PI: 4.5739
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019348genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.76.7e-37101012102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++e+iswse+g++fvv+++ +fak++Lp yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++gkkell++i+
   Lus10019348  10 FLTKTYQLVDDPATDEVISWSETGSTFVVWKTADFAKDLLPAYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANDNFQQGKKELLSQIR 97 
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ks
   Lus10019348  98 RRKS 101
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.3E-61699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-37799IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-33799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.9E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAQRSVPAPF LTKTYQLVDD PATDEVISWS ETGSTFVVWK TADFAKDLLP AYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANDNFQQGKK ELLSQIRRRK SVTATPPQAQ AAENGNSNND  120
NGDDQNNNNN ANNNSSTQSG DDMGSSSTSS PDSKNPGSTT TTTAQFADEN EKLRKDNESL  180
SSELAQAKKQ CDELISFLTD YVKVRPEQID RIMRRSSNGD DNDDDENDDE SDGGEGVKLF  240
GVVLKCNGKK RGRAGDEDGF GVGPGAKEIK ICY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2669926129Heat shock factor protein 1
5d5v_B3e-2669926129Heat shock factor protein 1
5d5v_D3e-2669926129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247253GKKRGRA
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019348
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079229.11e-116heat shock factor protein HSF24
SwissprotP223351e-93HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A067KI291e-114A0A067KI29_JATCU; Uncharacterized protein
STRINGLus100193480.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.18e-70heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]