PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10019407

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

YABBY

Protein Properties

Length: 206aa MW: 22683.5 Da PI: 8.8586

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10019407	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	203.6	7.5e-63	7	195	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee................lleelkveeenlksnv 86 +eq+Cy+ CnfCn +lavsvP + l+ +vtvrCGhCt+l svn+a a q + s+ +++ +++ + + ++++++ + ++ Lus10019407 7 MVAEQLCYIPCNFCNIVLAVSVPCSNLMDIVTVRCGHCTNLWSVNMAAAFQYSLSASRAQQQQQQPadhlslhhhqkggnynVYQAGGSTNNDQQYYN 104 5689****************************************9987655555544444444447899999999998884444444444333333 PP YABBY 87 ......ekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++s+ +s+++ kl++ ++ p + + v+rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aa nWahfP+ihfgl Lus10019407 105 ggggssSSSSSSAKSIPTAKLTTRTSPLPPLQNRiVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAANNWAHFPHIHFGL 195 100000333333334444444443333333333369***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.6E-69	8	195	IPR006780	YABBY protein
SuperFamily	SSF47095	7.07E-8	130	189	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.1E-4	149	187	IPR009071	High mobility group box domain
CDD	cd00084	8.22E-4	149	185	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MGSCIEMVAE QLCYIPCNFC NIVLAVSVPC SNLMDIVTVR CGHCTNLWSV NMAAAFQYSL 60 SASRAQQQQQ QPADHLSLHH HQKGGNYNVY QAGGSTNNDQ QYYNGGGGSS SSSSSSAKSI 120 PTAKLTTRTS PLPPLQNRIV NRPPEKRQRV PSAYNQFIKE EIQRIKANNP DITHREAFST 180 AANNWAHFPH IHFGLMLESN KKATY*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10019407

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022144840.1	5e-79	axial regulator YABBY 5-like
Swissprot	Q8GW46	8e-76	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1U8H955	6e-77	A0A1U8H955_CAPAN; axial regulator YABBY 5-like isoform X3
STRING	Lus10019407	1e-154	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-76	YABBY family protein

Link Out ? help Back to Top
Phytozome	Lus10019407

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]