PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019430
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 490aa    MW: 55346.8 Da    PI: 5.8351
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019430genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-0688111327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  t++C f+++ G+C  Gd+C+F+H+p
  Lus10019430  88 TVPCFFYFQ-GFCGKGDKCTFSHSP 111
                  899******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156632.6E-12665No hitNo description
PROSITE profilePS5010310.887635IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015734IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.5963763IPR000571Zinc finger, CCCH-type
SMARTSM003560.443962IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-581111IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-485111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4585112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-685110IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDEELQKRNT DCVYFLASPL TCKKGAECEY RHSEMARLNP RDCWFWLSGT CLNPTCAFRH  60
PPLEKPAETP SESGAVPTQA PRPTNKPTVP CFFYFQGFCG KGDKCTFSHS PDGSIPAAKS  120
FKVPSTTNSD VRPVENNKNS TGNKTAAAPT EPRNNLSVTP KKPSANVKLQ SRPKVQQQLV  180
PKVAVQKSSS LETAASNGER VGVIDSDSML PSENYNEDRS YTGADQNSEE HVDEHVEPEE  240
RWESSPGFDV LVDNEEEEEN HLHYEAEQEY VAALDGEQRE VDNRFAEYGF EESVRHEEPL  300
GYSQSGEMDL RDRLRKRRAV GNEPFTRSSR RRDDTRPYEH GLSERLRGRL ASEVGRAGIR  360
PIDDYGIHMN GGSHHGRLRH SQFDWPREYR ERTGAPRRPF IPSDVRRRPF ARERRSSEAC  420
GEFSAPKSLA EIKEEKRRAE ENGYQNARDE DMDGIESVNF DGPKPLNEIL KEKKKLGSSV  480
EYDNGSCSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311317DRLRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100194300.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823