PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10019633

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 310aa MW: 34373.3 Da PI: 6.3348

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10019633	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.2	1.2e-42	12	112	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++Cv+apyfp eqp+kfa vh++FGasn+ k+l++lp ++reda++sl+yeA+ar+rdPvyG+vg i++lqq+l++l+ +l++++ Lus10019633 12 PCAACKFLRRKCTSECVFAPYFPPEQPSKFATVHRVFGASNIAKILNELPASDREDAVTSLFYEADARLRDPVYGCVGYISHLQQRLKELHFNLESAR 109 7**********************************************************************************************999 PP DUF260 99 eel 101 ++l Lus10019633 110 HQL 112 985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.256	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-42	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MAMASPVSHN SPCAACKFLR RKCTSECVFA PYFPPEQPSK FATVHRVFGA SNIAKILNEL 60 PASDREDAVT SLFYEADARL RDPVYGCVGY ISHLQQRLKE LHFNLESARH QLSCYVSPPP 120 VPPVTSNFNP NPTPFPQQMP MMTSVPGVPG GQIINNNNLQ QQPQQQQQQF HNLMQVQELQ 180 QQMGPGSSMA QQEMIMRAYD QQLQQIQQEA ICRGGDNGSV TLAGYNQIGN HQHHQHQHHH 240 KSVSPISLGI GRDIHDGSST VAPPAVGGIN HDDDDDDGRF QLFLQQPPQQ ERAEEEEETG 300 RSRSNLIGP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-44	10	126	9	131	LOB family transfactor Ramosa2.1
5ly0_B	9e-44	10	126	9	131	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10019633

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017614453.1	4e-61	PREDICTED: LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	5e-54	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A0B0PS92	9e-60	A0A0B0PS92_GOSAR; LOB domain-containing 36-like protein
STRING	Lus10019633	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-54	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	Lus10019633

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]