PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019638
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 237aa    MW: 27200.1 Da    PI: 5.4922
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019638genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.44.1e-21241613127
          NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskk 96 
                   Gf F+Pt+++l++++L  k+++ + +++++ ik++d+y++ePwd+ + ++++e  ++yf++k ++k +++k   r  a  +g+W+   ++ ++ ++ 
  Lus10019638  24 SGFVFRPTEKQLICKFLIGKIRRGDaVREDDLIKDLDVYSMEPWDIWNGFSQDELsDLYFYTKLKRKPSNNK-IDRgvAGGKGRWQGETSKSKIQVNL 120
                  69*******************99985666677**************865544333488*****999877655.555355669****999999999985 PP

          NAM  97 gelvglkktLvfy..........kgrapkgektdWvmheyr 127
                   ++ gl++ L+            ++ ++  +  +W+m eyr
  Lus10019638 121 MKNRGLQEELTCImnfvirkfryRNAENAEQDGHWIMTEYR 161
                  555555554444333336666555666667899*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-1813176IPR003441NAC domain
PROSITE profilePS5100520.87522178IPR003441NAC domain
PfamPF023658.8E-1125161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDDEAHAALQ ERRRAYVASL NLGSGFVFRP TEKQLICKFL IGKIRRGDAV REDDLIKDLD  60
VYSMEPWDIW NGFSQDELSD LYFYTKLKRK PSNNKIDRGV AGGKGRWQGE TSKSKIQVNL  120
MKNRGLQEEL TCIMNFVIRK FRYRNAENAE QDGHWIMTEY RENRAGAVDW VIFHLRRDGN  180
SLASSSPSGS PTTSESGDST CTDDEDDDND EDDPKRPKIS DTWQSRKSQS KYECSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019638
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100196381e-176(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.15e-11NAC 007