PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10019652

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Protein Properties

Length: 129aa MW: 14732.6 Da PI: 5.0376

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10019652	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.6	1.7e-16	6	84	18	99
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p +f +h + ++ tle sg++Wev+l ++++g+++l++GW eF+k + Lk+gD++vF+l+++s f +v+vf+ Lus10019652 6 IPTEFEGRHRE-RLIGMFATLEVASGETWEVELVKNGGDGKIWLANGWGEFAKHQFLKQGDVLVFRLEQDSYF--HVMVFDP 84 77777666743.35678899***********99999999************************999999..9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	14.071	1	85	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0016	4	85	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.7E-18	4	85	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.63E-18	4	85	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.4E-13	5	83	IPR003340	B3 DNA binding domain
CDD	cd10017	4.67E-18	5	83	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MIYQYIPTEF EGRHRERLIG MFATLEVASG ETWEVELVKN GGDGKIWLAN GWGEFAKHQF 60 LKQGDVLVFR LEQDSYFHVM VFDPSTVSER IKCFSHDQVE VEEGFVVGNE TGKGEMGGGE 120 EKRRKVWK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10019652

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017972198.1	4e-14	PREDICTED: B3 domain-containing transcription factor VRN1
STRING	Lus10019652	4e-89	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00260.1	1e-09	B3 family protein

Link Out ? help Back to Top
Phytozome	Lus10019652