PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019665
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 228aa    MW: 25515.9 Da    PI: 6.2925
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019665genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-1968117255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+  l+g
  Lus10019665  68 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDRAAYMLRG 117
                  59******9.**********965...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.49E-3267125No hitNo description
PROSITE profilePS5103222.62968125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-3268126IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2368126IPR016177DNA-binding domain
SMARTSM003802.0E-3568131IPR001471AP2/ERF domain
PfamPF008477.0E-1469117IPR001471AP2/ERF domain
PRINTSPR003672.2E-116980IPR001471AP2/ERF domain
PRINTSPR003672.2E-1191107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAAELMEALE PFMKSPPSCF SLNQLNPSQI LQIQAQLQTQ MTNYKNPLAV TPSPMKRSVA  60
AVKPPTKLYR GVRQRHWGKW VAEIRLPKNR TRLWLGTFET AEEAALAYDR AAYMLRGDFA  120
RLNFPQMVHT DGELIRTLHS SVEAKLQAIC QSLEEKKKTG EVENRAAPVK VEDTEISSSS  180
SSNSNSNSSP ESEISFFDFT ETESRWGIGE TFGLEKFPSA EIDWAAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2267130468ATERF1
3gcc_A6e-2267130468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019665
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022774944.11e-77ethylene-responsive transcription factor ERF060-like isoform X3
SwissprotO656651e-66ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A2J6KUI81e-70A0A2J6KUI8_LACSA; Uncharacterized protein
STRINGLus100196651e-169(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.16e-45ERF family protein