PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019708
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YA
Protein Properties Length: 1600aa    MW: 178254 Da    PI: 6.9551
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019708genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.71.2e-3014751531158
    CBFB_NFYA    1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58  
                   +ep+YVNaKQ+++Il+RRq+Rak+e ekk+ +k rkpylheSRh+hA++R+Rg gGrF
  Lus10019708 1475 EEPVYVNAKQFHGILRRRQARAKAELEKKV-QKPRKPYLHESRHQHAMKRARGGGGRF 1531
                   69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522001.26E-32137297IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101402.3E-21143249IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010429.356144294IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002555.0E-31145294IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015821.4E-40146330IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.3003.0E-4323361IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525404.21E-52326587IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.4E-24342592IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3003.8E-4362373IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.3E-8374505IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF467851.63E-8572668IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.40.50.3003.8E-4577624IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF520583.13E-417461010IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.107.7E-307521011IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM0036974783807IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514507.05784805IPR001611Leucine-rich repeat
SMARTSM0036950899922IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514505.548901923IPR001611Leucine-rich repeat
SuperFamilySSF520583.13E-4110431151IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.106.6E-810511114IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003693210521072IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514505.87110541076IPR001611Leucine-rich repeat
SMARTSM0036913010751097IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514507.11110771098IPR001611Leucine-rich repeat
SMARTSM005213.6E-3514731534IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.59914741534IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-2714761531IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.3E-2314771499IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686014791499IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.3E-2315081531IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1600 aa     Download sequence    Send to blast
MTDSVLPPST FRLLMPSNQS QTEEVDDFTS FTDSPSSFHS ASSNFTTADD DSSCPDGVAS  60
SSFSPHFDTV CPNLTICEGS SSSSSSSFAT ADDDSSCSDG VASSSFSPHF DTVCPNLTIC  120
KESSSSSSSS FATAAAPPSS SSSNCYEVFL SFRGTDTRHS FVSHLYSALT QKGIKTFKDD  180
KDLERGKQIE REILGAIRQS RLSIVVFSKD YASSSWCLDE LQTIVDFCAR KDTDEDIEKI  240
PHDLIPIFYG VNPDDVSNVD DNSCYAESFA KHQKFFPDRK LRKWKVALKT AAESSGWDSN  300
NKDEKVLIDE IVALVSKKLV RHDQVSNKSS ADLVGMELRI KEMESRLSIG LVDVRMVGIW  360
GMPGIGKTTI AQAVYDHINH KFDACCFLRN IREAAEKAAG LNYLRKELVS ALMGGDGLGI  420
VDDHNLDKLM ERRFCDRCLL IVLDDVSHVD QLASLVGHHE WFGSGSRIIV TTHNKQVIEQ  480
YVDDIYEAKP LSDDESRHLF RQHAFGKNVS DCQGFMLEFS QRVVGYCQGI PLALKVLGGS  540
LFNMNRSEWE SRLKTLEEVP PENIMNSLTQ QCFDVLQRSE KRIFLDIACF FKGDNEDYVV  600
SILEDRGCPA RHGLEVLRRR CLISSREDNT NEVWMHDLMQ QMGRQVVRQQ SSAYVGSRLW  660
LAEEICQLWA QNMGTHKVEA IILDISAAKI ALPLGLEAFR LMSQLRLLKI CSTTQQSGSR  720
EYLVRKEACP DTYDECISEN RDRLPEGCKL RFSGKLISLS DELRVLHWYE FPLKSLPANF  780
YPCNLVELNL SYNRLKNLWT GEKVFDNLKF MKLSYSQELT QTPDFRGTKN LEILILEGCT  840
KLIQVHPSVG SLEKLTCLNL KDCKRLQNLP KSMGMASLEI LILSGCSKLK WLPDMEQNMG  900
NLKELLLDST GISRIPASVA NLTGLVELSV TNCKRLQFFP KAVGRCLSLK ILRLTGCSEL  960
RLLHFDLDCL ENLEELYADG TRLGLRFMMV NPRSDRGLWK LKKLSFKGCE RSPFSLPDFF  1020
RDHMSQSEPA RKTLQNFFWV GNYDRFCGAA KLSSLTSLDL RDSNLKELPF ELKGLAFLTD  1080
LDLSGNPIVG LSELPGKLKI LGLTNCCNLL SLPSLPSTTY SLEAPNCKSL SKVYSPQCIE  1140
PGKKRGLNFM NCAQLGDDEV PALLHSHVIQ TSLHCVDRMS IIAPRCRMPS QWLLQNGHAP  1200
IEERTDRAFL LLYPSEHSYT TVRGLVVWAT FKVSDSRCRA KACLRFDMSC DGKKVESDEI  1260
ILNEGTGCDS DQLWLSYIPP FGAKNTKIGG GCVLDKQHHI DQSAQTLLNS TIYSQPWWRG  1320
IGNNNSTFEE SRPKSNASPS SVEHLKVSDA NEAMQRSDGL DNGVSFNKDI QTTVSSQLAA  1380
SVFSRTDGSG GTAKEVPQST QISAMGGHPE HNSQMKLVGH SIVSVLSFCG LIWILHLDYA  1440
LASYPYSDPQ FGGMMATFGP QAMHARMPLP LEMEEEPVYV NAKQFHGILR RRQARAKAEL  1500
EKKVQKPRKP YLHESRHQHA MKRARGGGGR FLSSKKQEGH SMNPDAAAKT AKQSGGKLPA  1560
PNWFPTNHTG DFHSYHHSSP ADGINGGGGR HGNAVSNTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jrn_A5e-361393182169AT1G72930 protein
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019708
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8297970.0EU829797.1 Linum usitatissimum clone LU0012B12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100197080.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.21e-89WRKY family protein