PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10019819

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

M-type_MADS

Protein Properties

Length: 395aa MW: 44703.9 Da PI: 6.6455

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10019819	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.2	1.2e-14	10	51	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+n++ r t+ kR++ +lKK +E vLCd+++++iif+++ Lus10019819 10 LIKNDRSRMQTYKKRKANLLKKINEFTVLCDVKACIIIFGPN 51 59**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-12	1	67	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.736	1	51	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.09E-18	2	98	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-7	3	23	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.28E-18	4	93	No hit	No description
Pfam	PF00319	7.0E-16	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-7	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-7	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MGHKRVKMEL IKNDRSRMQT YKKRKANLLK KINEFTVLCD VKACIIIFGP NTNNNGSNQL 60 ELETWAPESC SIQDLIQQYR TSDQPRRCYS VSDYFAEKKK RVDVEIAKLR KQIHKQQFPT 120 EDGGDRFNRY SDDELKLILG SIDSKLEAAD QRIAALNAKR NLGIVHHQAV PITTWPQNNN 180 NLVEVGFGIE REFDDDDDVN VVHHQDLSRH CQYEQQNSVN ALLEQNSNHN NNYFDNYYQN 240 DNNNSFSFPA EGHNFFPEVP FCFQPGELTS PLMADFGSPE KGFNFGLMPA QRYPNFLMQP 300 EMTIKNQVVG RSNGMIHHGL LNSLPGTRTC TGTSSRLWNF DSAGSSDAGM SFIASSSYKQ 360 QFQVSPMAAG FANPRMFDES IGGGFEFGGG EHKL*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MGHKRVKMEL IKNDRSRMQT YKKRKANLLK KINEFTVLCD VKACIIIFGP NTNNNGSNQL  60
ELETWAPESC SIQDLIQQYR TSDQPRRCYS VSDYFAEKKK RVDVEIAKLR KQIHKQQFPT  120
EDGGDRFNRY SDDELKLILG SIDSKLEAAD QRIAALNAKR NLGIVHHQAV PITTWPQNNN  180
NLVEVGFGIE REFDDDDDVN VVHHQDLSRH CQYEQQNSVN ALLEQNSNHN NNYFDNYYQN  240
DNNNSFSFPA EGHNFFPEVP FCFQPGELTS PLMADFGSPE KGFNFGLMPA QRYPNFLMQP  300
EMTIKNQVVG RSNGMIHHGL LNSLPGTRTC TGTSSRLWNF DSAGSSDAGM SFIASSSYKQ  360
QFQVSPMAAG FANPRMFDES IGGGFEFGGG EHKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10019819

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10019819	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	1e-18	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Lus10019819