PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020059
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 696aa    MW: 76107.1 Da    PI: 5.906
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020059genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox628.7e-202277156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Lus10020059 22 KKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 77
                 688999***********************************************998 PP
2START209.21.6e-652104301206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela +a++elv++a+a+ep+W        e +n++e+l++f+++ +      ++ea+r+s+vv+m++++lve+l+d++ qW + +     +a+t++v+
  Lus10020059 210 ELAVAAMEELVRMAQAGEPLWINGNatdgEVLNEEEYLRTFPRGIGpkplgLRSEASRESAVVIMNHVNLVEILMDVN-QWATVFCgivsRAMTMDVL 306
                  57899******************99999999************999********************************.******99999******** PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  s+g      galq+m+ae+q++splvp R+ +fvRy++q+g+g w++vdvS+ds ++ p      + +++pSg+li++++ng+skv wvehv+++++l
  Lus10020059 307 STGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQQGEGIWAVVDVSLDSLRPTPL----SKNRRRPSGCLIQELPNGYSKVMWVEHVEVDDAL 400
                  **********************************************************95....333369**************************** PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  +h+++r+lv+sgla+gak+wv tl+rqce+
  Lus10020059 401 VHNIYRPLVHSGLAFGAKRWVNTLERQCER 430
                  ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-23677IPR009057Homeodomain-like
SuperFamilySSF466895.01E-19979IPR009057Homeodomain-like
PROSITE profilePS5007116.7951979IPR001356Homeobox domain
SMARTSM003891.9E-182083IPR001356Homeobox domain
CDDcd000868.82E-192280No hitNo description
PfamPF000462.2E-172277IPR001356Homeobox domain
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
SuperFamilySSF559612.52E-34201432No hitNo description
PROSITE profilePS5084843.177201433IPR002913START domain
CDDcd088751.25E-126205429No hitNo description
SMARTSM002347.3E-68210430IPR002913START domain
PfamPF018529.1E-56211430IPR002913START domain
Gene3DG3DSA:3.30.530.209.5E-4306430IPR023393START-like domain
SuperFamilySSF559614.5E-24450691No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MGGGADPSGD DQDATGQPPN KKKRYHRHTQ RQIQEMEAFF KECPHPDDKQ RKELSRELGL  60
EPLQVKFWFQ NKRTQMKAQH ERHDNSILKS ENEKLRDENN RYKEALSNAS CPNCGGPTTI  120
GEMSFDEQHL RIENARLRDE IDRISAIAAK YVGKPITSSF SQPPPSRSTL ELGSSNFSRS  180
ASFVGEMYGA NDLLRSISGP TEADKPMIVE LAVAAMEELV RMAQAGEPLW INGNATDGEV  240
LNEEEYLRTF PRGIGPKPLG LRSEASRESA VVIMNHVNLV EILMDVNQWA TVFCGIVSRA  300
MTMDVLSTGV AGNYNGALQV MTAEFQVPSP LVPTRENYFV RYCKQQGEGI WAVVDVSLDS  360
LRPTPLSKNR RRPSGCLIQE LPNGYSKVMW VEHVEVDDAL VHNIYRPLVH SGLAFGAKRW  420
VNTLERQCER LASSLAINIP AGDFCVMTGP EGRKSMLKLA ERMAMSFCTG VGASTAHAWT  480
TLSPSGTDDV RVMTRKSMDD PGRPPGIVLS AATSFWISVP PKRVFDFLRD ENHRSEWDIL  540
SNGGQVEEIA HIANGRDHGN SVSLLRVNSA NSSQSNMLIL QESSVDSTGS YVIYAPVDIA  600
AMNIVLTGGD PDYVALLPSG FAILPDGPPT TTTTTTTFDS GEMVHDVVGS GGSLLTVAFQ  660
ILVDSVPTAK LSLGSVATVN NLIKCTVERI KAAVA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020059
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021294392.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_021294395.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_021294396.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_021294397.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A1R3I2E10.0A0A1R3I2E1_COCAP; Uncharacterized protein
STRINGLus100200590.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]