PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10020226

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

FAR1

Protein Properties

Length: 250aa MW: 27870.4 Da PI: 7.9906

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10020226	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.8	1.1e-20	64	167	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerr.........traetrtgCkaklkvkkekdgkwev 78 fY +YA++ GF vr++ +++ r+g ++ rt vC+keg+++ ++k+ + + a r+gC+ak+ k+ ++gkw v Lus10020226 64 FYTAYAQRNGFGVRVRDHSRG-REGFVVARTIVCNKEGFKKGKEKAkvnnitylkkknN----KlktaalplpAAAPFRMGCNAKVAFKRLETGKWTV 156 9**************9998.8888***********9999999999865431....244566777678889****************** PP FAR1 79 tkleleHnHel 89 +++ +eHnH+l Lus10020226 157 KRFIKEHNHPL 167 *******99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-18	64	167	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MDSDGGGGSD GNPDPISGDD GAASAPDLNR NESSSNREKE IAVVDPDEPY VGREFDSEAE 60 SVAFYTAYAQ RNGFGVRVRD HSRGREGFVV ARTIVCNKEG FKKGKEKAKV NNITYLKKKN 120 NKLKTAALPL PAAAPFRMGC NAKVAFKRLE TGKWTVKRFI KEHNHPLYVQ ELFSCPRVLQ 180 IPADDRIVHQ LNEELAKERV RSASLREMVQ ALLSHIEEHT QGLSQKVECM VEKVNKIDDS 240 REKEHIAEY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10020226

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10020226	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-28	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Lus10020226