PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020309
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 287aa    MW: 31723.2 Da    PI: 9.8218
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020309genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-1682122446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++eE+++l+ a++++G++ W+ Ia+ ++ gRt++ +k++w+ 
      Lus10020309  82 FSEEEEDRLITAHRMYGNK-WAMIAKVFP-GRTDNAVKNHWHV 122
                      8******************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-2162129IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-86286IPR009057Homeodomain-like
PROSITE profilePS5129423.52374128IPR017930Myb domain
SMARTSM007171.3E-1378126IPR001005SANT/Myb domain
PfamPF002496.4E-1482122IPR001005SANT/Myb domain
CDDcd001671.68E-1182123No hitNo description
Gene3DG3DSA:1.10.10.604.5E-1787121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSKVERFASG TKRPFWGLSL DMNGQSAAKV AAVEEEVDNS RSVVGLGGKR QSKKKVCAFN  60
YGKSCRLRWF NQLDPKITRT IFSEEEEDRL ITAHRMYGNK WAMIAKVFPG RTDNAVKNHW  120
HVMTARRQRE QSNPYRRRRP FSSYYSPSSS GSPAFPPKMG SESTATASTC TTDLSLSPSS  180
ARQAGCLPFS RFNPPRKYQL GAHGFVVAAE DDETRTKERD NGSNNSNSYN NSGVYDRVTP  240
GSNSSSSENG SVETRIESRT ELTILNDENV GIATIEFIDF LGVGSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-196212742107B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139YRRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020309
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391642.12e-51PREDICTED: myb-related protein Myb4-like
STRINGLus100203090.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-36myb domain protein 105