PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020503
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 256aa    MW: 29263.8 Da    PI: 9.6308
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020503genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.3e-1384131355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Lus10020503  84 RDHVIAERKRREKLSQKFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 131
                  6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.08881130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1784147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-1084131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1685145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-1186135No hitNo description
SMARTSM003532.4E-1487136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEDHTHFINQ WRQMDSSNNS SFGVPTLENG LFNTTMPSHH HALEMGFLKP KQEAAEMYLS  60
QQNWFGNHHN VISKGRTRMS QQSRDHVIAE RKRREKLSQK FIALSAIVPG LKKMDKASVL  120
GDAIKYLKQL QERVKILEEQ TRNKSMESAK VVVKKSRVFD VGYDECGSGE QLPEIEARFC  180
DRHVLIRVHC EKKKGLLEKT VAEIEKLHLT VINTSVLTFG SSALDLTIIA QMDMEFNMTV  240
KEVVQKLHPA FNLFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1485134857Transcription factor MYC2
5gnj_B3e-1485134857Transcription factor MYC2
5gnj_E3e-1485134857Transcription factor MYC2
5gnj_F3e-1485134857Transcription factor MYC2
5gnj_G3e-1485134857Transcription factor MYC2
5gnj_I3e-1485134857Transcription factor MYC2
5gnj_M3e-1485134857Transcription factor MYC2
5gnj_N3e-1485134857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994ERKRRE
29095RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020503
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486799.12e-94transcription factor bHLH25-like
RefseqXP_015388301.12e-94transcription factor bHLH25-like
SwissprotQ9T0724e-57BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2H5QA058e-93A0A2H5QA05_CITUN; Uncharacterized protein
STRINGLus100205030.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-59bHLH family protein