PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020643
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 251aa    MW: 27831 Da    PI: 5.3978
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020643genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.31.6e-4561372128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                  ppGfrF Pt+eelv++yL+k++eg+  e  ++vi+ +diy+++Pw+Lp+    ++++++++w++F++r++++a+g r+nr+t sgyWkatg+   v+s
  Lus10020643   6 PPGFRFFPTEEELVSFYLHKQLEGTIQEGlHQVIPVIDIYEIDPWHLPSvageRCRGDTEQWFYFTPRQEREARGGRPNRTTGSGYWKATGSPSYVYS 103
                  9***********************986651566***************546666666888************************************** PP

          NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++++++g+kkt+vfykg+ap g+kt+W m+eyr+
  Lus10020643 104 SNNRVIGMKKTMVFYKGKAPAGRKTKWKMNEYRA 137
                  ********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-494164IPR003441NAC domain
PROSITE profilePS5100549.3765165IPR003441NAC domain
PfamPF023652.0E-236136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAGQFPPGFR FFPTEEELVS FYLHKQLEGT IQEGLHQVIP VIDIYEIDPW HLPSVAGERC  60
RGDTEQWFYF TPRQEREARG GRPNRTTGSG YWKATGSPSY VYSSNNRVIG MKKTMVFYKG  120
KAPAGRKTKW KMNEYRAIDG GLSESSSPPI PQLRREFSLC RIYVVSGTFG AFDRRPLEAA  180
TSTSIGAQVP SDVPSSSAQV PAAVVERTNS SETSNSGGDH GFSQGAGIAD MEIADCLDEQ  240
FIDWEQLDWP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-37516320166NAC domain-containing protein 19
3swm_B3e-37516320166NAC domain-containing protein 19
3swm_C3e-37516320166NAC domain-containing protein 19
3swm_D3e-37516320166NAC domain-containing protein 19
3swp_A3e-37516320166NAC domain-containing protein 19
3swp_B3e-37516320166NAC domain-containing protein 19
3swp_C3e-37516320166NAC domain-containing protein 19
3swp_D3e-37516320166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020643
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629180.11e-113NAC domain-containing protein 90
SwissprotQ9FMR31e-95NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2C9V1V91e-111A0A2C9V1V9_MANES; Uncharacterized protein
STRINGLus100206430.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-98NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]