PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020684
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 198aa    MW: 21024.1 Da    PI: 10.7511
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020684genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.95.1e-173064135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C  C+t+ TplWR gp g+k+LCnaCG+++rk+++
  Lus10020684 30 CIDCKTSRTPLWRTGPAGPKSLCNACGIRHRKRRR 64
                 889*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-122476IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.32E-122564No hitNo description
Gene3DG3DSA:3.30.50.104.7E-152864IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034403055IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.2153060IPR000679Zinc finger, GATA-type
CDDcd002023.20E-113064No hitNo description
PfamPF003207.9E-153064IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDLGDSVIVS NPEVKPLSVG NEDHDGKKLC IDCKTSRTPL WRTGPAGPKS LCNACGIRHR  60
KRRRAAMALE TAASDQKLSK KHQSISPAAD STSSSESTTT STDTAKSSAV AAASGTTSPP  120
SAGQVRVRVV YSGKDRSTTM IQKKKKKSSS LPRLPAPIPS TPLVVVKKQR CQRRRKLAEE  180
EQAAFCLMAL SCASIFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15963RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020684
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100206841e-140(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16141.12e-19GATA family protein