PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021023
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 564aa    MW: 61625 Da    PI: 9.1352
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021023genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12296341655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Lus10021023 296 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 341
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-15293347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-12294343No hitNo description
Gene3DG3DSA:4.10.280.101.4E-13295346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-13296346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9296341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5141935.231346563No hitNo description
SuperFamilySSF525401.21E-54346526IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.3E-66347563IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd018682.10E-118348521No hitNo description
SMARTSM001733.0E-19348523No hitNo description
TIGRFAMsTIGR002312.1E-30350516IPR005225Small GTP-binding protein domain
SMARTSM001753.1E-99351523No hitNo description
PRINTSPR004491.2E-38351372No hitNo description
PfamPF000714.7E-55352521IPR001806Small GTPase superfamily
SMARTSM001741.1E-9353519No hitNo description
SMARTSM001767.7E-4356557No hitNo description
PRINTSPR004491.2E-38374390No hitNo description
PRINTSPR004491.2E-38392414No hitNo description
PRINTSPR004491.2E-38463476No hitNo description
PRINTSPR004491.2E-38498520No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0005525Molecular FunctionGTP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MDSSGTRNFH NLSDPSESGL LRFRSAPSTL FAGDDSAPVT GFREFDIKSA AKVEEAAASG  60
YPSSTLTRSC SGLPPHYPKQ NTTAAAVAGV DRDSSYGLLA PLGAAAAAAK TVDYSGLARQ  120
RSSPAGLFVD LSAPQNGHYA SMKSYNNSSN RSEASPRQRS PLSFLSRSSS SMAMLSSELE  180
HDQSVSPTSS DPTKNLVDGR FYGTTDAARF PSYGSWNESS SQFTDTLTAQ HHHSHQSGGS  240
QLGRLSHHLS LPKNVGSCGG ASGEIMGAAI DKFLLFQDSV PCKIRAKRGF ATHPRSIAER  300
VRRTRISERM RKLQDLVPNM DKQTNTADML DLAVDYIKDL QTQYKKIDYV FKVVLIGDSA  360
VGKSQLLARF ARNEFSIDSK ATIGVEFQTK TLSIDNKTVK AQIWDTAGQE RWRPFEKSFR  420
YRAVTSAYYR GAVGAMLVYD MTKRQSFDHM ARWLEELRGH ADKNIVIMLI GNKSDLGSLR  480
AVPQEDAQEF AQRENLFFME TSALESTNVE TAFLTVLTEI YRIISKKTLT ANDELDSNSG  540
LLKGTRIIVP GQDTDSGKRG GCC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ojk_A3e-813485344184Ras-related protein Rab-11B
4ojk_B3e-813485344184Ras-related protein Rab-11B
5fbl_B5e-813405636218Ras-related protein Rab-11A
5fbq_B5e-813405636218Ras-related protein Rab-11A
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Q3B8170.0A0A1Q3B817_CEPFO; HLH domain-containing protein/Ras domain-containing protein
STRINGLus100210230.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-49bHLH family protein