PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021196
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 131aa    MW: 14364.7 Da    PI: 7.6819
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021196genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-201869256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr+++ +g+++AeIrd + ng  +r++lg+f++aeeAa+a+++a+ +++g+
  Lus10021196 18 RYRGVRRRP-WGKFAAEIRDSTRNG--QRIWLGTFDSAEEAARAYDRAAYAMRGH 69
                 6********.**********44465..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.92E-171877No hitNo description
SuperFamilySSF541712.03E-241878IPR016177DNA-binding domain
SMARTSM003801.5E-351882IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-311878IPR001471AP2/ERF domain
PfamPF008472.3E-151869IPR001471AP2/ERF domain
PROSITE profilePS5103223.671876IPR001471AP2/ERF domain
PRINTSPR003672.3E-111930IPR001471AP2/ERF domain
PRINTSPR003672.3E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MDNQATGEEG GGGGGDVRYR GVRRRPWGKF AAEIRDSTRN GQRIWLGTFD SAEEAARAYD  60
RAAYAMRGHI AVLNFPHEYP MGRGPASAAT SAAAGSSSSS SRQVVELEYL DNRLLDEMLE  120
QEENRRRRQG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-371811414114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021196
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026453213.18e-46ethylene-responsive transcription factor 14-like
SwissprotQ9LTC55e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G9I9T06e-46A0A2G9I9T0_9LAMI; Uncharacterized protein
STRINGLus100211962e-89(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.12e-26Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]