PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021213
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 167aa    MW: 18361.2 Da    PI: 8.2381
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021213genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000133254123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H++ H
  Lus10021213 32 YECSFCKRGFTNAQALGGHMNIH 54
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.42E-72959No hitNo description
Gene3DG3DSA:3.30.160.607.5E-53056IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5313259IPR007087Zinc finger, C2H2
SMARTSM003550.0093254IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MAPKKQRSSS DSSGEDTVND TVVSLPKPKR SYECSFCKRG FTNAQALGGH MNIHRRDRQK  60
STAAAATNVP QPVGTFAVWD AQYRHLYFDH HQQPNGNSAN NGYYNNMAAV PPSSVSNHQR  120
RLDRSVSNVE EVVWGTNLSL RVGAAGSGQE EEEVMDLELR LGPYPQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021213
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100212131e-123(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-15C2H2 family protein