PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021259
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YA
Protein Properties Length: 349aa    MW: 38156.9 Da    PI: 9.3873
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021259genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.28.4e-31167222258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   p+YVNaKQy++Il+RR++Rak+e e+kl +++rk+y+h+SRh hA+rRpRgsgGrF
  Lus10021259 167 GPIYVNAKQYHGILRRRKSRAKAEMENKL-SRTRKQYMHHSRHLHAMRRPRGSGGRF 222
                  69***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.9E-34164225IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.309165225IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.1E-23168190IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.5E-27168222IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860170190IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.1E-23199222IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MTMKTLYFKE HEGIAQNPVG QLSSSSSSAP TTVPWWNVMG SQPAYVESQL KAFSVEGGDQ  60
VTATKQTSPT IDQGQDGLGK EAHTEFNIFP ASSGNSKSIS EGQKAVPAQS FFPLQATMVA  120
PYDLGFGQQM ICAKYPPIDQ YYGIFSAYGP QIPGRIMLPM DMSTDEGPIY VNAKQYHGIL  180
RRRKSRAKAE MENKLSRTRK QYMHHSRHLH AMRRPRGSGG RFLTKMEIDK MTREGHNFHL  240
SQPTGSQSSG GGGLLQSDSG GSANSSKEAN GYRGGGMNHH HHHNRSGSEV TSLFSRDEED  300
MGGCFQIKNM MPPFHSFPGM MNTGHDIVMP SSKWVAAAVD NCSSNLKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18166229265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021259
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021688502.11e-106nuclear transcription factor Y subunit A-10-like
RefseqXP_021688503.11e-106nuclear transcription factor Y subunit A-10-like
RefseqXP_021688506.11e-106nuclear transcription factor Y subunit A-10-like
TrEMBLA0A1Q3B7W71e-103A0A1Q3B7W7_CEPFO; CBFB_NFYA domain-containing protein
STRINGLus100212590.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-53nuclear factor Y, subunit A10