PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10021399

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

M-type_MADS

Protein Properties

Length: 175aa MW: 20230.4 Da PI: 9.3563

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10021399	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.8	4.9e-12	9	50	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 + en s r + +Rr +KK eELSvLC++e+ +++s++ Lus10021399 9 FMENRSARLHCLKNRRRNFMKKVEELSVLCGVEAFAVVYSPD 50 67999***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.0E-10	1	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.274	1	48	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.27E-17	1	64	No hit	No description
SuperFamily	SSF55455	8.76E-16	2	75	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.3E-12	10	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MRKKVKLAFM ENRSARLHCL KNRRRNFMKK VEELSVLCGV EAFAVVYSPD EPGFAVWPRN 60 EAEAQQVLLK YQTIPEDAHQ ADNKLDQEKY LEGLISKLQA KQRVQLKRTD ELEFAYLMDE 120 VHFGKGLDGM DLHEVNSLSL LIKDRLRNLR ERAKKLEITT KNGVAIDALL YENK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10021399

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10021399	1e-125	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	5e-21	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Lus10021399