PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021409
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 256aa    MW: 27267.3 Da    PI: 8.8336
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021409genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001290112123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y C+ C++sF++   L  H  +H
  Lus10021409  90 YDCKTCNRSFPSFQALGGHRASH 112
                  88**********99999998887 PP
2zf-C2H213.50.00021170192123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F++   L  H+r+H
  Lus10021409 170 HECSICGAEFNSGQALGGHMRRH 192
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.6E-1289114IPR007087Zinc finger, C2H2
SMARTSM003550.2390112IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.59E-890112No hitNo description
PROSITE profilePS5015711.69790117IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576672.59E-8165192No hitNo description
PfamPF139122.2E-13169194IPR007087Zinc finger, C2H2
SMARTSM003550.011170192IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014170197IPR007087Zinc finger, C2H2
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEMESKTQFG DPASFAMKRR RSPSPPRSAT STTTTAAGSS SSYGSTEEED DQDMANCLIL  60
LAQGHHGGRG GENRQKRVVG GEDSAGLFVY DCKTCNRSFP SFQALGGHRA SHKKPKPNPG  120
PTESEGKEVI SPPSPLLPPT SVTVKQLIQP NATQQLAVKP GPGGKSRKVH ECSICGAEFN  180
SGQALGGHMR RHRASNGSGP TTTMESDQRK RNNVLTLDLN MPAPEDLDNR QGDQSKFPFT  240
SSIVFSGPTL VGCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021409
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022958330.11e-60zinc finger protein ZAT5-like
TrEMBLA0A2C9VYK35e-53A0A2C9VYK3_MANES; Uncharacterized protein
STRINGLus100214090.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-45C2H2 family protein