PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021466
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 252aa    MW: 28084.5 Da    PI: 9.0045
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021466genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.3e-19180213134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs+Cg+t+Tp+WR+gp g+ktLCnaCG+++r+ +
  Lus10021466 180 CSHCGVTHTPQWREGPMGPKTLCNACGVRHRSGR 213
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.5E-16174224IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-15178237No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14179211IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.741179210IPR000679Zinc finger, GATA-type
CDDcd002022.95E-15179226No hitNo description
PROSITE patternPS003440180205IPR000679Zinc finger, GATA-type
PfamPF003201.3E-16180213IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MADSWIYDWA NFSGLPDDFS LENLDLSLES LEDVDPAVDW DTKFKDLEPP SVFLPNFPPD  60
ISSANDIKPV KVEGTSVLQN ESPELKKSFR TSSPVSVLDN NSSSSCSAEI PTRRPRSKGV  120
RSQRRTYEFF HRLFAGERRF HPVAPLNSET ESNKKKNLTA VSRNISEAAK KKQPVINSKC  180
SHCGVTHTPQ WREGPMGPKT LCNACGVRHR SGRLFPEYRP AGSPTFVPEL HSNSHRKVLE  240
MRMKASSSNG P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021466
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040891.12e-60PREDICTED: GATA transcription factor 11-like isoform X1
RefseqXP_011040892.12e-60PREDICTED: GATA transcription factor 11-like isoform X2
TrEMBLA0A2P2LDR04e-60A0A2P2LDR0_RHIMU; Uncharacterized protein
STRINGLus100214660.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-38GATA transcription factor 11