PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021509
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 182aa    MW: 19268.7 Da    PI: 8.4995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021509genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004978100123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  Lus10021509  78 YQCKTCDRCFNSFQALGGHRASH 100
                  9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.2E-1077102IPR007087Zinc finger, C2H2
SuperFamilySSF576673.84E-677100No hitNo description
PROSITE profilePS5015710.38878105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SuperFamilySSF576673.84E-6135152No hitNo description
PfamPF139121.4E-4139154IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MADTIDKVVV KGKRTKRQRP LLLTANSNTN IQVSSAATTT STCSTSGEST CTEEEDMANC  60
LILLAQGMTT SPAEAFVYQC KTCDRCFNSF QALGGHRASH KRPRTNEEKS NDVVAVKSVD  120
RKEELDLSLG ILNSKQSKVH ECSICGAGFS SGQAARAAGE KRIGVGSEFT GAGRCGWAGI  180
K*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021509
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027469.19e-38PREDICTED: zinc finger protein ZAT5
SwissprotQ681X41e-25ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A061ET062e-36A0A061ET06_THECC; Nucleic acid binding protein, putative
STRINGLus100215091e-131(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-25C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]