PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021637
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 491aa    MW: 54408.8 Da    PI: 6.4612
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021637genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046390412123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C k+F++   L  H r+H
  Lus10021637 390 HQCPICLKVFPSGQALGGHKRSH 412
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-51541No hitNo description
PROSITE profilePS501579.0371739IPR007087Zinc finger, C2H2
SMARTSM003550.321739IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-51740IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SMARTSM003551584108IPR015880Zinc finger, C2H2-like
SMARTSM003550.066296318IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.24E-7296318No hitNo description
PROSITE profilePS5015710.741296323IPR007087Zinc finger, C2H2
PfamPF139129.7E-12296320IPR007087Zinc finger, C2H2
PROSITE patternPS000280298318IPR007087Zinc finger, C2H2
SuperFamilySSF576676.24E-7385412No hitNo description
PROSITE profilePS501578.933390412IPR007087Zinc finger, C2H2
SMARTSM003550.035390412IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-12390412IPR007087Zinc finger, C2H2
PROSITE patternPS000280392412IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEEDYQLQLQ QQQKMKHVCK FCRKSFPCGR SLGGHMRSHM INDVSAQTDG TLITRKKLPS  60
LIITTSPPPP HHNADSAAQV VVEKLCKECG KGGFQSWKAL FDHMKFHHSS FDQKAKEEDE  120
LEDEDEDEDS WENSGSNMKQ NMVIMDSSQS DNEIMTGISM PNRRKRSINK RRSAANSSSF  180
SAVSGVEEQE QEEVALCLML LSRDVTNWGS NSAHKDHNGT IAAAESSDNN YVLSESPPNR  240
LDQEELVKGT IVVVMKSEIS VSENPRKGGD VVKRKRKLKE CEDQSMEVCK DDNIKFECNT  300
CNKSFHSYQA LGGHRASHKK TKGCFASIID ETNNADEEEE DTDQKMIMMK SVNNEILDNK  360
SPTPPSPPVS ANRNVASGSL GRKRDVNKSH QCPICLKVFP SGQALGGHKR SHLVATNNSK  420
VAVLPTAEVV VPAAEAAKIP VIKDFLDLNL PAPVDEESTN NNSSINLGFN QWWAGTATNM  480
NNNNNNHLWV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021637
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080350.11e-107zinc finger protein ZAT4
TrEMBLA0A067K5C61e-106A0A067K5C6_JATCU; Uncharacterized protein
STRINGLus100216370.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.17e-21C2H2-like zinc finger protein