PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021707
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family RAV
Protein Properties Length: 351aa    MW: 38283.6 Da    PI: 9.2883
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021707genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.32.9e-1161109155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+ykGV   + +grW ++I++      + r++lg+f  ++ Aa+a++ a ++++g
  Lus10021707  61 SKYKGVVPQP-NGRWGSQIYEK-----HHRVWLGTFNDEDSAARAYDVAVLRFRG 109
                  89****9888.8*********3.....5**********99************998 PP
2B3100.41e-31184283196
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+ tpsdv+k++rlv+pk+ ae+h      g  + +++ l ++d  g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F+++g +e++l
  Lus10021707 184 FEKTVTPSDVGKLNRLVIPKQQAEKHfpiqgrG-GSGGGVLLNFKDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLRAGDIVRFQRSG-EEQQL 279
                  99***************************9953.457999*************************************************887.55556 PP

                  EEEE CS
           B3  93 vvkv 96 
                  ++ +
  Lus10021707 280 YIDF 283
                  7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-661109IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-1661117IPR016177DNA-binding domain
CDDcd000181.08E-2361116No hitNo description
Gene3DG3DSA:3.30.730.105.1E-2062117IPR001471AP2/ERF domain
SMARTSM003804.6E-2762123IPR001471AP2/ERF domain
PROSITE profilePS5103220.11262117IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-38178288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-31183283IPR015300DNA-binding pseudobarrel domain
CDDcd100174.51E-29183281No hitNo description
SMARTSM010191.1E-26184287IPR003340B3 DNA binding domain
PROSITE profilePS5086314.776184287IPR003340B3 DNA binding domain
PfamPF023622.6E-28184283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MECISSSSTT DDSTTTATTT GVEKSHTPRE SLCRVGSGAS SVVLDPESEI EAAESRKLPS  60
SKYKGVVPQP NGRWGSQIYE KHHRVWLGTF NDEDSAARAY DVAVLRFRGR DAVTNFNPPP  120
TASSSDEAAF LSAHSKAEIV DMLRKHTYDD ELEQSRRQGK KQSHNQNNAV GSSGSGGSAR  180
DDLFEKTVTP SDVGKLNRLV IPKQQAEKHF PIQGRGGSGG GVLLNFKDGG GKVWRFRYSY  240
WNSSQSYVLT KGWSRFVKEK GLRAGDIVRF QRSGEEQQLY IDFSKSTSSN VVAELDRGSV  300
QPVQMVRLFG VNIFELAGSG GGGCNGKRLM ETTAAAFECS KKQRIIIDVL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4918329313124DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021707
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524409.11e-151AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM91e-126RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLB9SEJ01e-150B9SEJ0_RICCO; DNA-binding protein RAV1, putative
STRINGLus100217070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-123related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]