PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10021711

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 385aa MW: 42584.9 Da PI: 5.9043

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10021711	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.4	6.1e-14	171	217	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ + +Lr+llP+ +K +Ka+ L ++++++k+L Lus10021711 171 KSHSEAERRRRERINNHLTKLRSLLPST-----TKTDKASLLAEVIQHVKEL 217 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.85	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-11	171	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-14	172	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.6E-15	172	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-12	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.08E-5	181	220	No hit	No description
Gene3D	G3DSA:3.30.70.260	9.8E-5	256	314	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MCGLKEEDIN NNNNNNININ TNNNLPQQHH QGGGGDHCTS QSYNNQDEAF HQMQHHHYHH 60 HQPTTSFSDF TTPPPPWGHL HQYPLHDQFL VPPPPPPTSS YGGGGQFFNR GMQFAYESSA 120 HADHLRIISE TLGPVIHPIG GGGGVPFGLH AELGKMTAQE IMDAKALAAS KSHSEAERRR 180 RERINNHLTK LRSLLPSTTK TDKASLLAEV IQHVKELKRQ TNLIAETTPI PTESDELTVD 240 ATNSVDEDGK FVIKASLCCE DRSDLLPDLI RTLKSLRLRT LKAEITTLGG RVKNVLFITA 300 DQNDDDDDDE EEEEDQQDQQ QPIQYSVSSI HEALKAVMEK GGGGGGGDES SSSGSVKRQR 360 TNTSNNVNMM EQQQQLLQQH HMSL*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MCGLKEEDIN NNNNNNININ TNNNLPQQHH QGGGGDHCTS QSYNNQDEAF HQMQHHHYHH  60
HQPTTSFSDF TTPPPPWGHL HQYPLHDQFL VPPPPPPTSS YGGGGQFFNR GMQFAYESSA  120
HADHLRIISE TLGPVIHPIG GGGGVPFGLH AELGKMTAQE IMDAKALAAS KSHSEAERRR  180
RERINNHLTK LRSLLPSTTK TDKASLLAEV IQHVKELKRQ TNLIAETTPI PTESDELTVD  240
ATNSVDEDGK FVIKASLCCE DRSDLLPDLI RTLKSLRLRT LKAEITTLGG RVKNVLFITA  300
DQNDDDDDDE EEEEDQQDQQ QPIQYSVSSI HEALKAVMEK GGGGGGGDES SSSGSVKRQR  360
TNTSNNVNMM EQQQQLLQQH HMSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	181	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10021711

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011021594.1	1e-125	PREDICTED: transcription factor bHLH30-like
Refseq	XP_011021607.1	1e-125	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	1e-102	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A1L6K4S8	1e-122	A0A1L6K4S8_POPTO; Basic helix-loop-helix family protein
TrEMBL	B9HIY4	1e-122	B9HIY4_POPTR; Uncharacterized protein
STRING	Lus10021711	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4589	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-68	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10021711

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]