PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021968
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 277aa    MW: 31289.1 Da    PI: 6.86
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021968genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.91.6e-07130177455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka  L + ++Y++sLq
  Lus10021968 130 SHSLAERVRREKIGERMKFLQDLVPGC----NKVTGKAVRLDEIINYVQSLQ 177
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.55E-9124181No hitNo description
SuperFamilySSF474592.09E-16124195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.615126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-16126197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-4130177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-6132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEKQFLWSNE EWRDPCSSLL QQLLLPDPTN GGLFFVNNNT NQGDPFVESG FPPYKPNSPI  60
LPHDHTMNPN PNVNITKLQG KTRAAAADAG EGSSLSEQMI IGKKRKKETE EEESKDYIHV  120
RARRGQATDS HSLAERVRRE KIGERMKFLQ DLVPGCNKVT GKAVRLDEII NYVQSLQRQV  180
EFLSMKMATV NPRSMEFNNI KSLLLCKDNV SEGSTAGGQQ EHQGFPNYNQ TDQHHHFGAS  240
NLIIRHNQDV QMELWNDDLQ SVVQMGTLGL TQQPRH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102106KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021968
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243164.12e-52PREDICTED: transcription factor bHLH62-like
SwissprotQ9LK486e-47BH077_ARATH; Transcription factor bHLH77
TrEMBLA0A2R6RRH73e-52A0A2R6RRH7_ACTCH; Transcription factor bHLH62 like
STRINGLus100219680.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.16e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]