PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022018
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 117aa    MW: 12931.9 Da    PI: 10.1425
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022018genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.47.9e-121055247
          NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdL 47
                 p+G+rF+P++eelv++yLk k++g++l+  + i+++d+y +  Pw++
  Lus10022018 10 PVGIRFNPKEEELVNYYLKGKAKGEPLPS-NLIHKIDLYGAkTPWEI 55
                 89**************************9.89*******8757*998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-194115IPR003441NAC domain
PROSITE profilePS5100512.3239116IPR003441NAC domain
PfamPF023652.4E-1310114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MESTKGYTYP VGIRFNPKEE ELVNYYLKGK AKGEPLPSNL IHKIDLYGAK TPWEIFPGNK  60
RIKDARERQI GIKKTFSFKV TSEKAKVKGK SCASSSSTAV AEGSSGWIMH EYSLLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022018
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525963.12e-21NAC domain-containing protein 53
TrEMBLB9SIZ01e-20B9SIZ0_RICCO; Uncharacterized protein
STRINGLus100220184e-80(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2731723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.15e-10NAC-like, activated by AP3/PI