PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022021
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 199aa    MW: 22589.5 Da    PI: 9.987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022021genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv +++++G ++W++ ++  g+ R++k+c++rw +yl
      Lus10022021 14 KGPWTPEEDEILVSYIRRFGHNNWRALPKLAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding53.36.2e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T eE+e ++++++ lG++ W++ a++++ gRt++++k++w++
      Lus10022021  67 RGNFTREEEETILKLHQTLGNR-WSAMAARLP-GRTDNEIKNHWHS 110
                      89********************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.959965IPR017930Myb domain
SuperFamilySSF466894.21E-3110108IPR009057Homeodomain-like
SMARTSM007171.7E-141363IPR001005SANT/Myb domain
PfamPF002494.5E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-251568IPR009057Homeodomain-like
CDDcd001673.28E-111661No hitNo description
SMARTSM007171.5E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129418.68466116IPR017930Myb domain
PfamPF002492.9E-1567110IPR001005SANT/Myb domain
CDDcd001672.89E-1069112No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2669115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVRNPCCERM GVKKGPWTPE EDEILVSYIR RFGHNNWRAL PKLAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TREEEETILK LHQTLGNRWS AMAARLPGRT DNEIKNHWHS RLKKRFQHDR  120
RSSSCNNMTI LTSTAASSSS SSSLQGLVDD QKSSSSTGDR KESAQGFDDS SCANGDMKFW  180
YDLFMKAQDS KLSAALEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022021
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8866276e-71HQ886627.1 Linum usitatissimum clone GMU2AYZ01AKNZJ microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621222.14e-81transcription factor MYB15-like
SwissprotQ9SJX83e-71MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A2C9VG588e-80A0A2C9VG58_MANES; Uncharacterized protein
STRINGLus100220211e-146(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-71myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]