PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022097
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 239aa    MW: 27394.8 Da    PI: 5.4699
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022097genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS131.41e-4028234161374
         GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFle 255
                   ++rL  fA+++++++++n l  + l++l+++ ++ +++E+l+V+ +++lh+l    ++ ++er+e+L++++sl+Pk v+++e+++d++ +   ++  
  Lus10022097  28 FASRLLCFAKSMNINLQINRLDNRPLQNLNTQVINKDREETLVVCAQFRLHHLN---HNNPDERSEFLRVLRSLEPKGVILSENNMDCSCNgcvDYSS 122
                  679*****************9999*****************************8...55566667********************8883333459*** PP

         GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
                  +f++ +ey + ++ds+++ +    + r + Er++++ e+ ++++++g++    +e++e+W er++ +GF+   + e+a ++a++llrk++ ++++rve
  Lus10022097 123 GFTRRVEYLWRFLDSTSSAF----KGRESEERRMMEGEAAKALTNRGEM----NERKEQWCERMRGVGFSGEGFCEDAIDEARALLRKHDnNWEMRVE 212
                  ****************7765....6666666666777799999999998....88888********************************9999**** PP

         GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                  e++g + l Wk++p+ ++S W+
  Lus10022097 213 EKDGFVGLWWKKQPVSFCSLWK 234
                  *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.9861213IPR005202Transcription factor GRAS
PfamPF035143.5E-3828234IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVTAAIEGSS DQSCSEPPFS IGPPGDNFAS RLLCFAKSMN INLQINRLDN RPLQNLNTQV  60
INKDREETLV VCAQFRLHHL NHNNPDERSE FLRVLRSLEP KGVILSENNM DCSCNGCVDY  120
SSGFTRRVEY LWRFLDSTSS AFKGRESEER RMMEGEAAKA LTNRGEMNER KEQWCERMRG  180
VGFSGEGFCE DAIDEARALL RKHDNNWEMR VEEKDGFVGL WWKKQPVSFC SLWKLQAE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022097
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021638883.11e-131nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC81e-118NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLQ4VYC41e-128Q4VYC4_POPTR; Nodulation Signaling Pathway 1 protein homologue 1
STRINGLus100220971e-177(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.18e-77GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]