PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10022264

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 193aa MW: 20788 Da PI: 8.1281

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10022264	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.2	1.4e-43	19	117	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el++++ Lus10022264 19 PCAACKFLRRKCLPDCIFAPYFPPEEPHKFANVHKIFGASNVSKLLHEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVIRLQKELDATN 116 7*********************************************************************************************9987 PP DUF260 99 e 99 + Lus10022264 117 A 117 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.541	18	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-43	19	116	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MAANSSASSS TTSNYTNSPC AACKFLRRKC LPDCIFAPYF PPEEPHKFAN VHKIFGASNV 60 SKLLHEVLPH QREDAVNSLA YEAEARLKDP VYGCVGAISV LQRQVIRLQK ELDATNADLI 120 RYAYTNTTAT TTNDINIPPI GRSSSSSSSA AASSRMNNMY DHHQGYYGNY SSWNNNNCGG 180 DGHGRGNGGG GF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-64	9	123	1	115	LOB family transfactor Ramosa2.1
5ly0_B	1e-64	9	123	1	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10022264

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ884127	0.0	HQ884127.1 Linum usitatissimum clone Contig1437 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021594225.1	9e-81	LOB domain-containing protein 25-like
Swissprot	Q9FML4	1e-72	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A251JMK3	2e-79	A0A251JMK3_MANES; Uncharacterized protein
STRING	Lus10022264	1e-142	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	4e-66	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Lus10022264

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]