PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10022373

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Dof

Protein Properties

Length: 212aa MW: 22869.9 Da PI: 9.3606

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10022373	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.1	3.5e-37	45	102	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 e+ +kcprC+s +tkfCyynnysl+qPryfCk+CrryWt+GGalr+vP+Ggg+rk+ Lus10022373 45 EAVIKCPRCQSGDTKFCYYNNYSLTQPRYFCKTCRRYWTRGGALRDVPIGGGSRKSAP 102 5678***************************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-22	45	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-33	47	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.885	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MDPPPQWQQQ QGIAVGGEEE ALSYSAATPP PPPHATAAAQ SRKGEAVIKC PRCQSGDTKF 60 CYYNNYSLTQ PRYFCKTCRR YWTRGGALRD VPIGGGSRKS APAKRSSSSA DRSPPPHAAS 120 KKKLVTTTAD KAGQELNLAY HPPPRAAYKF SEVVHQFLNP NYYSMVPLLP YHNNCGGGRG 180 DELGMMKPLP PPPPPPPAFC CPAFHGGGFE I*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10022373

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10022373	1e-154	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3854	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	7e-29	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Lus10022373