PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10022463

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 281aa MW: 30817.7 Da PI: 6.7867

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10022463	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.1	3.1e-43	7	107	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++Cv+apyfp eqp+kfa vh++FGasnv kll+++p +reda++sl+yeA+ar+rdPvyG+vg+i+ lq++l+ql+ +l+++k Lus10022463 7 PCAACKFLRRKCTQECVFAPYFPPEQPAKFASVHRVFGASNVAKLLNEIPAGQREDAVNSLAYEADARLRDPVYGCVGLISILQHKLKQLHIDLDTAK 104 7**********************************************************************************************999 PP DUF260 99 eel 101 +el Lus10022463 105 QEL 107 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.776	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-43	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MSSQNSPCAA CKFLRRKCTQ ECVFAPYFPP EQPAKFASVH RVFGASNVAK LLNEIPAGQR 60 EDAVNSLAYE ADARLRDPVY GCVGLISILQ HKLKQLHIDL DTAKQELSKY IGPQAMLPNL 120 GSSPYIAAGM NMMMMPNHHH QLHHQNMMLP MMGIPTDHNN NNNTNEQQLH HQQIYAVAAE 180 SVPQQQQQQQ QQFEQEGIRI IDGGGGGEAE TGRTVGMNLN QIRSPISAAS LALGTSSDNR 240 AYQVEMKPVV YHVQPQNLEG RSSGCSTGDD EGRSIDRASN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-50	5	110	9	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-50	5	110	9	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10022463

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021630090.1	4e-76	LOB domain-containing protein 36-like
Refseq	XP_021630091.1	4e-76	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	6e-70	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A2C9UWZ1	9e-75	A0A2C9UWZ1_MANES; Uncharacterized protein
STRING	Lus10022463	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-67	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	Lus10022463

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]